Moodle 2.0 adopted a new mechanism for file handling to improve security. The moodledata directory structure has completely changed and it resist us to manual upload of files through FTP. There is a new file picker interface to upload files.
For detail see:- http://docs.moodle.org/en/File_handling_2.0
If anyone still want to use previously used structure of moodledata please go through this:-http://docs.moodle.org/en/File_system_repository_configuration
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